Showing posts with label Clinical Research. Show all posts
Showing posts with label Clinical Research. Show all posts
Wednesday, January 11, 2012

Fusion plasma research helps neurologists to hear above the noise

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Fusion plasma researchers at the University of Warwick have teamed up with Cambridge neuroscientists to apply their expertise developed to study inaccessible fusion plasmas in order to significantly improve the understanding of the data obtained from non-invasive study of the fast dynamics of networks in the human brain.

Unless they undertake invasive techniques, neuroscientists are limited to external sensing when studying live brains. One key method the researchers turn to is magnetoencephalography (MEG) in which sensors measure the tiny magnetic fields outside the head that are generated as our brains think. In order to get a ‘functional blueprint’ of how our brains work, researchers want to use these measurements to pinpoint which different regions of the brain appear to be synchronised with each other as a person does different tasks. In this study, researchers were interested in how the brain reacts to surprise. Healthy volunteers were asked to listen to a series of ‘beeps’, some of which were regular and repetitive and some of which were different and out of sequence, and researchers ‘listened in’ to their brain activity using state-of-the-art MEG setup at the MRC Cognition and Brain Sciences Unit in Cambridge. 

MEG has great potential as a useful diagnostic tool - it is non-invasive and much more comfortable for the subject than other techniques - but the neuromagnetic signal varies fast, the signal to noise ratio is low meaning that such data are challenging to understand.
These challenges - extracting signal from noise in observations that can only be made from external sensors - are also often faced in magnetically confined plasmas for fusion. Fusion plasma researchers at the University of Warwick have developed methods to deal with data analysis problems similar to those faced by the neuroscientists. The Warwick researchers have now shared these methods and analytical techniques with their neuroscientific colleagues in Cambridge and Birkbeck. Together they have been able to carry out new studies that are already beginning to provide new insights into the brain’s network - they have made the first map of the dynamically changing network of the brain as it deals with the ‘surprise’ of the different sounds. They have just published the first results of this work in the Journal of Neurophysiology in the paper “Fast reconfiguration of high frequency brain networks in response to surprising changes in auditory input.” The two lead authors on the paper were Dr Ruth Nicol and Professor Sandra Chapman from Centre for Fusion, Space and Astrophysics, in the University of Warwick’s Department of Physics who worked closely with Professor Ed Bullmore and his team in Cambridge University’s Brain Mapping Unit at Addenbrookes and other neuroscientists in Cambridge and Birkbeck.
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Monday, January 9, 2012

2 genes affect anxiety, behavior in mice with too much MeCP2

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The anxiety and behavioral issues associated with excess MeCP2 protein result from overexpression of two genes (Crh [corticotropin-releasing hormone] and Oprm 1 [mu-opioid receptor MOR 1]), which may point the way to treating these problems in patients with too much of the protein, said Baylor College of Medicine scientists in a report that appears online in the journal Nature Genetics. 
Much of the work was done at the Jan and Dan L. Duncan Neurological Research Institute at Texas Children's Hospital. 
MeCP2 is a "Goldilocks" in the protein world. When the protein is lacking or defective, girls develop the neurological disorder Rett syndrome early in life. Too much protein results in the more recently identified MeCP2 duplication syndrome, which usually affects boys, who may inherit the gene duplications either from their mothers or, in rare cases, develop it sporadically. In both cases, anxiety and social behavioral deficits are typical of those with the disease, along with other motor problems and cognitive defects. 
"This is a nice example of a translational story," said Dr. Rodney Samaco, assistant professor of molecular and human genetics at BCM and first author of the paper. "We first identified the mouse model for MeCP2 duplication syndrome and then found people with the disorder in the clinic. We went back to the lab and found out that MeCP2 was indeed the major contributor to this phenotype in patients. We have now identified two genes involved in two major symptoms of the syndrome. Eventually, we may take the information back to the clinic to develop a treatment for patients." 
"Loss or Gain of MeCP2 affects the expression of hundreds of genes, but discovering that two genes are the culprits in mediating anxiety and social behavioral problems is surprising," said Dr. Huda Zoghbi, professor of molecular and human genetics, neurology, neuroscience, and pediatrics at BCM and director of the NRI. She is the corresponding author of the report and a Howard Hughes Medical Institute Investigator. 
Patients with MeCP2 duplication disorder have a duplication in chromosomes that span both the MECP2 gene and another called IRAK1. But with this new study, it is now clear that excess MeCP2 accounts for the neuropsychiatric symptoms.
In mice, doubled MeCP2 levels caused both anxiety and autism-like behaviors and altered the expression of several hundred genes. Of these, two genes – Crh and Oprm1, are implicated in anxiety and social behavior, said Samaco. 
"Then, when we reduced the levels of Crh, we saw reduced anxiety," he said. "When we reduced levels of Oprm1, we improved the social behavior problems." 
This finding is important because it shows that tweaking the expression of genes that the protein affects, rather than trying to adjust the levels of the finicky MeCP2 protein itself, can modify symptoms of MeCP2 disorders. 
In fact, Samaco also reduced levels of the protein that is a cellular receptor for Crh, both through molecular means and with the use of a drug, and found that anxiety levels also went down. That could provide another means of dealing with anxiety associated with the duplication syndrome.
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Friday, January 6, 2012

Cell-CT: A new dimension in breast cancer research

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Despite advances in both the diagnosis and treatment of breast cancer, the disease remains a leading worldwide health concern. 

Now, a new imaging technology under investigation at the Biodesign Institute at Arizona State University may help researchers pinpoint subtle aberrations in cell nuclear structure, the molecular biosignature of cancer, thus significantly improving diagnostic accuracy and prognosis by providing early detection of the disease. 

The team, led by Professor Deirdre Meldrum, ASU Senior Scientist and Director of the Center for Biosignatures Discovery Automation at Biodesign has examined normal, benign and malignant cells, using the first and only research Cell-CT (VisionGate, Inc., Phoenix, AZ)—a specialized instrument capable of imaging cells in vivid 3-D with true isotropic resolution. The technology permits the examination of subtle cellular details inaccessible by more conventional forms of microscopy that are inherently 2-D. 

The 3-D movie images of cells observed in the study reveal numerous telltale traces of their condition as normal or aberrant. Professor Meldrum says "there are numerous quantitative morphological parameters that are indicative of disease and may be used as biosignatures for disease staging and diagnosis. For example, a cancerous cell typically has an enlarged nucleus, nuclear invaginations, chromosome mutations, and unique nuclear shape changes." 

Breast cancer remains the most common cancer in women. In 2011, an estimated 232, 000 new cases were diagnosed and some 39,000 fatalities occurred. Over a normal lifetime, 1 in 8 women will be diagnosed with the disease. In general, breast cancer begins either in the ducts of the mammary gland, (ductal carcinomas) or the lobes of the breast (lobal carcinomas). 

Currently, the definitive clinical diagnosis of malignancy relies on careful examination of the nuclear structure of cells that have been prepared by histological staining and subjected to bright field microscopy. According to Vivek Nandakumar, lead author of the current study, pathologists qualitatively examine cell features including nuclear size, shape, nucleus-to-cytoplasm ratio, and the texture of cell chromatin. However, these observations do not involve quantitative measurements that would promote a more accurate analysis.

Meldrum concurs, as to the shortcomings of traditional pathology. As director of the Microscale Life Sciences Center, an NIH Center of Excellence in genomic science, she has devoted much of her career to the close study of cell heterogeneity, and the manner in which individual cells can go awry as they transition to diseased states. "In our analysis of live single cells we can quantify significant variation from cell to cell under the same conditions," says Meldrum. 

The group used Cell-CT to examine 150 cells in each of three specific categories: normal, benign fibrocystic and malignant breast epithelial. Controversy remains as to whether breast fibrosis, which may result from hormonal changes, is a normal condition or an early harbinger of malignancy. The condition occurs when ligaments, scars, supportive tissue or other fibrous tissue become more prominent in the breast than fatty tissue. 

Cell-CT is a new kind of microscope, able to image cells in three-dimensions, using a technique called optical projection tomography. Cell-CT operates much like a normal CT scanner, though it uses visible photons of light, rather than X-rays. Cells prepared for observation are not placed on slides, but are instead suspended in gel and injected through a micro-capillary tube that permits multiple imaging in 360 degrees. 

The scanning process produces hundreds of thin slices through the cell. These sections, or tomographs, are reassembled through computer software, forming a detailed 3-D portrait. Movies of cells seen in rotation brilliantly reveal shape asymmetries, a particularly useful tool for disease diagnosis.

The three cell types examined in the study fell into four distinct nuclear shape categories. Category 1 cell nuclei were slender, with marked concavity. Category 2 cells had a slight concavity and were bulky. Based on these shapes, the first two categories are termed mushroom cap morphology. (The Category 2 mushroom cap morphology was the most common nuclear form seen in all three cell types.) Category 3 nuclei were mostly convex in shape, while Category 4 nuclei were irregular and distorted in shape.

Importantly, cells drawn from the cancerous cell line showed the largest fraction of irregular, Category 4 and Category 2 nuclei and the smallest fraction of nuclei with a Category 3 convex shape. The malignant cells also displayed the greatest shape heterogeneity within Category 4. The fibrocystic cell sample contained the largest fraction of Category 3 and the lowest fraction of Category 1 nuclei. The largest overall shape heterogeneity with respect to the four shape categories occurred in the normal cells. 

Cell and nuclear volume were observed to increase as one moves from normal to fibrocystic to malignant cells, though fibrocystic cells had, on average, the largest nucleus-to-cytoplasm volume. Textural distinctions among cells and arrangement of chromatin were also observed. In all, the team computed 42 distinct 3-D morphological and textural descriptors of cellular and nuclear structure. Cell-CT technology is able to resolve cell features down to less than a half micron. 

Study co-author Roger Johnson, Research Laboratory Manager at the Center for Biosignatures Discovery Automation, stresses that the subtle nuclear differences observed, particularly for the malignant cells, would likely have been missed had the samples been examined with conventional 2-D imagery. As a result, the architecture imaged with Cell-CT supercedes the existing nuclear grades established for cancer diagnosis using a microscope. 

Though much progress has been made in understanding the transformation of cells from normal to diseased states, patient outcomes for many forms of cancer remain discouragingly poor. Many believe a new paradigm for investigating such cancers will need to be established, and the field has drawn interested researches from diverse disciplines. Paul Davies, another co-author of the current study is a physicist and cosmologist in ASU's College of Liberal Arts and Sciences and part of a new National Cancer Institute funded consortium, devoted to studying the physical science of cancer: "We expect that insights and methods drawn from physical science will lead to radical new ideas for understanding and tackling cancer," says Davies. 

The group's results provide a new window on the variations of nuclear structure that often signal cell malignancy. The unparalleled structural details produced by Cell-CT promise to dramatically improve 3-D nuclear morphometry, leading to a sensitive and specific nuclear grade classification for breast cancer diagnosis.
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Wednesday, January 4, 2012

Human trials under way for new HIV vaccine

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The first human trials for the new HIV injectible vaccine are under way, containing a specific protein which will target the most virulent strain of the virus. 
Researchers from the Imperial College London, the Hull York Medical School, the Medical Research Council clinical trial unit and the Infectious Disease Research Institute (IDRI) have come together to evaluate the anti-HIV shot.
The virus’ most virulent strain Clade C has caused the greatest number of HIV infections globally, infecting half of the 34 million people carrying the virus. It is the most prevalent strain in sub-Saharan Africa, according to an Imperial College statement.
Clade C strain is also predominant in India, China and South America. Vaccine candidates relevant to the sub-Saharan epidemic are critically important to prevent large-scale HIV infection in the fight against the global HIV epidemic.
The anti-HIV shot contains trimeric HIV envelope protein (gp140) relevant to Clade C strain. If it does prove to be safe, and brings on immunity, it could be considered for further testing and evaluated for its effectiveness in protecting women against HIV.
The trial has enrolled 36 healthy, HIV-negative women aged 18-45 years at St George’s University of London and the HYMS Experimental Medicine Unit at York Hospital.
‘Our collaboration marks an important juncture for the field as we begin to assess which routes of immunisation may provide the best responses to protect women,’ said Robin Shattock, professor of immunology at Imperial College, and who leads the consortium which developed the trial.
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Monday, January 2, 2012

12 MP doctors let off with Rs.5,000 fine for conducting illegal drug trials

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<-- Drug Trial Victim " Yatharth".

As penalties for subjecting patients to guinea pig treatment go, this one would not even register on the blip screen. 

A dozen government doctors in Indore got a mere slap on the wrist on Saturday evening when they were fined Rs.5,000 for allegedly conducting controversial drug trials on 1,883 poor and unsuspecting hospital inmates, many of whom suffered from side effects and some even lost their lives. 

The trials, that took place over a period of four years in three hospitals, shockingly did not either have the government's permission or the patients' informed consent. What was worse, the accused appeared to have covered their tracks by not furnishing the details of the drugs or vaccines used in the experiments as also the names and particulars of the victims. In these circumstances, assessing the precise extent of damage in terms of side effects and fatalities was an onerous task. 

Instead of looking at the criminal conduct of errant doctors belonging to government hospitals of Indore, the probe conducted by the city's chief medical and health officer (CMHO), Dr Sharad Pandit, merely invoked the Madhya Pradesh Nursing Homes and Clinical Establishment (registration and licence) Amendment Act, 2003, to impose the paltry penalty. The Madhya Pradesh government's disdain for the victims was further laid bare by the untouched provision of the same law that provides for a maximum fine of Rs.50,000. 

Even that amount, however, would not have been a serious deterrent for the doctors who, according to Paras Sacklecha (an Independent legislator from Ratlam), had pocketed Rs.1.44 crore from private pharmaceutical companies to conduct the trials. "They lured poor and illiterate patients without telling them about the implications involved," Sacklecha alleged. It was he who obtained the figure of 1,883 victims, including children and mentally challenged persons, from the government under the RTI Act. 

"In fact, without taking permission for the drug trial from the government, the doctors have not only taken the huge sum from pharma majors but also embarked on foreign tours," Sacklecha added. The penalty, interestingly, was imposed on the doctors for not furnishing the details of the victims who had been subjected to the trials. 

"A fine of Rs.5,000 each has been imposed on 12 doctors of autonomous medical colleges and hospitals attached with them for conducting drug trials on children and mentally challenged persons. The doctors had expressed their inability to provide details of drug or vaccine trial, citing a provision of the Drug and Cosmetics Rules, 1945," medical education department deputy secretary Shyam Singh Kumre said. 

In effect, therefore, action had been taken only for their failing to provide data to the CMHO under the nursing homes Act. Even the press note was silent on the illegality of the doctors' action. It merely talked about new norms: "The state government is serious about the complaints received in this connection and fresh guidelines will be issued after chalking out new parameters."

But Dr Anand Rai, the whistleblower and a government doctor of Dhar district, said: "A maximum fine of Rs.50,000 could be imposed if the nursing homes were not registered or were unable to furnish monthly data. Yet the fine slapped on the doctors was the bare minimum." 

Rai felt the government had simply let off the doctors despite their performing drug trials on patients who had gone to the government hospitals for routine treatment. "Putting such patients under clinical drug trials without taking their consent is a criminal offence," he added.
Between 2006 and 2010, the paediatrics department of MGM Medical College, Chacha Nehru Bal Chikitsalay Avum Anusandhan Kendra, and the department of medicines and neurology of M. Y. Hospital - all Indore- based - allegedly conducted thousands of clinical trials on children, men and women. 

The MP government looked the other way till the issue rocked the state assembly in the last monsoon session, forcing chief minister Shivraj Singh Chouhan to order an enquiry by the Economic Offences Wing. The latter curiously did not come out with the names of the culprit doctors, the beneficiary corporations or even the victims. However, last month, Chouhan claimed that no patient had died during the drug trials in Indore. 

"The state bureau of investigation of economic offences has submitted a chart, along with its report on unethical drug trials, on important facts and statistical data. This chart shows that 81 people had died or fell unwell after the trials. But it has not come to our notice that anyone died directly as a result of the drug trials," the CM told the House, leaving enough room for doubt about whether the home ministry was proficient enough to probe the cause of deaths after the trials. 

Recently, the National Human Rights Commission (NHRC) served a notice to the MP government over reports alleging illegal drug trials on mentally ill patients in Indore. The NHRC asked the state chief secretary to submit a report within four weeks, referring to a media report alleging that 233 mentally ill patients were subjected to drug trials in Indore. 

The NHRC wanted to know whether guidelines of the Indian Council of Medical Research (ICMR) were adhered to by doctors while taking approval for the trials from independent ethics committees attached to private hospitals. It also sought information on whether the nature of the drugs being tested had been revealed. Furthermore, the panel asked whether any survey had been conducted about the status of health of the mentally ill patients who underwent drug trials. 

"Every medicine has some side effects or risks associated with its use. It is very difficult to say what kind of side effects the patients on whom the drugs were tested may have suffered. The most shocking part of the entire Indore drug trial fiasco is that the doctors conducted investigational vaccination trials on illiterate persons without telling them about the implications involved," Dr Anand Rai said.
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